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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
82
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
82
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
56
November, 2017
26
August, 2017
9
November, 2018
3
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2832
bam
2593
bigWig
1526
tsv
1283
bed narrowPeak
1077
fastq
838
bigBed narrowPeak
281
bed broadPeak
259
bigBed broadPeak
249
bed bed3+
218
tagAlign
161
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
277
Homo sapiens
Biosample type
193
tissue
53
cell line
34
primary cell
1
in vitro differentiated cells
Organ
78
kidney
57
liver
41
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
17
pancreas
15
vasculature
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
281
AMP
Genome assembly (visualization)
258
hg19
253
GRCh38
Lab
279
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
narrow histone mark
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
281 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
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