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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
15
WGBS
8
single cell RNA-seq
Assay category
34
DNA methylation
8
Transcription
Date released
23
July, 2019
8
November, 2018
6
February, 2021
4
August, 2017
1
September, 2018
Available data
2950
bam
2734
bigWig
1804
bed narrowPeak
1193
tsv
1145
fastq
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
20
hic
19
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
42
Homo sapiens
Biosample type
29
tissue
12
primary cell
1
cell line
Organ
9
kidney
8
heart
6
epithelium
6
pancreas
4
liver
4
musculature of body
3
connective tissue
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
42
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
42 results
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Clear Filters
RRBS
WGBS
single cell RNA-seq
tissue
kidney
1
5
heart left ventricle
1
2
pancreas
1
2
body of pancreas
2
heart right ventricle
2
+ See 10 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
1
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