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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
Assay category
20
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3119
bigWig
1777
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
3
primary cell
2
cell line
Organ
4
pancreas
3
blood vessel
3
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
19
AMP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
20 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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