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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
8
single cell RNA-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
20
3D chromatin structure
8
Transcription
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
10
March, 2020
6
February, 2021
5
October, 2019
3
November, 2017
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
3392
bam
3159
bigWig
1817
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
32
Homo sapiens
Biosample type
17
tissue
6
primary cell
5
cell line
4
in vitro differentiated cells
Organ
6
kidney
6
liver
4
blood vessel
4
epithelium
4
pancreas
4
vasculature
3
heart
3
vein
2
musculature of body
Project
31
AMP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
28
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
6
audit script error
5
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
32 results
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Hi-C
single cell RNA-seq
ChIP-seq
FAIRE-seq
tissue
kidney
1
5
islet of Langerhans
2
liver
1
1
psoas muscle
2
aorta
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
1
pancreatic cell
2
chondrocytes
1
cell line
HepG2
1
3
EndoC_BH1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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