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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
3
ChIP-seq
1
FAIRE-seq
Assay category
5
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
4
July, 2019
3
November, 2017
2
October, 2019
Available data
3392
bam
3159
bigWig
1817
bed narrowPeak
1594
tsv
1189
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
5
primary cell
4
cell line
Organ
4
liver
3
blood vessel
3
brain
3
epithelium
3
vasculature
1
connective tissue
1
pancreas
1
vein
Project
9
AMP
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Hi-C
ChIP-seq
FAIRE-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
cell line
HepG2
3
Panc1
1
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