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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
36
ATAC-seq
20
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
49
DNA accessibility
39
DNA binding
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
27
control
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
24
August, 2017
24
May, 2022
18
February, 2023
11
October, 2018
8
January, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
October, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
1
November, 2018
1
November, 2019
Available data
46
bam
43
fastq
26
bed narrowPeak
10
bigWig
10
tagAlign
7
bed broadPeak
6
txt
4
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
118
Homo sapiens
Biosample type
119
tissue
37
cell line
12
primary cell
1
in vitro differentiated cells
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
28
T1D
Genome assembly (visualization)
413
hg19
GRCh38
Lab
59
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
lab.title!
Klaus Kaestner, Upenn
lab.title!!
Klaus Kaestner, Upenn
assembly!
GRCh38
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
25
36
18
7
3
4
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
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