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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
145
bam
144
bigWig
131
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
196
Homo sapiens
Biosample type
1728
tissue
485
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
30
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
196
AMP
Genome assembly (visualization)
178
hg19
145
GRCh38
4
hg18
Lab
179
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
lab.title!
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
induced pluripotent stem cell
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
pancreatic endoderm
4
1
immature adipocyte
2
2
definitive endodermal cell
2
1
lymphocyte of B lineage (iPSC)
1
1
1
primitive gut cell
2
1
endocrine cell
2
osteoblast
1
1
posterior foregut
2
preadipocyte
1
1
Posterior foregut
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
neuron cell of Hypothalamus (neuron)
1
smooth muscle cell
1
stem cell
1
white fat cell
1
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