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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1791
ChIP-seq
1435
total RNA-seq
482
ATAC-seq
284
single cell RNA-seq
212
DNase-seq
87
RNA microarray
54
pCHi-C
36
snATAC-seq
28
WGBS
21
RRBS
18
small RNA-seq
14
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
14
3D chromatin structure
Date released
8
July, 2019
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
20
hic
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
1
fastq
Organism
14
Homo sapiens
Biosample type
6
primary cell
6
tissue
2
cell line
Organ
4
limb
4
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
2
pancreas
1
connective tissue
1
kidney
1
vein
Project
13
AMP
1
ITG
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
11
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
month_released!
April, 2019
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
14 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
cell line
HepG2
1
Panc1
1
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