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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
986
histone modification
985
histone
498
narrow histone mark
486
broad histone mark
472
transcription factor
322
control
110
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
December, 2017
2
December, 2018
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
31
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
33
Homo sapiens
Biosample type
30
cell line
2
in vitro differentiated cells
1
primary cell
Organ
20
liver
10
blood
10
bodily fluid
2
connective tissue
Project
33
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
lab.title!
Klaus Kaestner, Upenn
month_released!
December, 2017
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
in vitro differentiated cells
adipocyte
2
primary cell
skeletal muscle myoblast
1
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