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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ATAC-seq
57
ChIP-seq
20
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
83
DNA accessibility
57
DNA binding
20
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
29
August, 2017
24
May, 2022
24
November, 2019
19
February, 2023
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
689
bam
bigWig
411
tsv
402
fastq
214
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
179
Homo sapiens
Biosample type
132
tissue
36
cell line
12
primary cell
1
in vitro differentiated cells
Organ
220
kidney
181
pancreas
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
80
epithelium
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
28
T1D
Genome assembly (visualization)
48
hg19
24
GRCh38
Lab
Klaus Kaestner, Upenn
113
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
month_released!
December, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
55
21
18
7
4
3
1
pancreas
3
1
4
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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