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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
Assay category
214
DNA binding
Target of assay
123
histone
123
histone modification
73
broad histone mark
50
narrow histone mark
47
transcription factor
44
control
9
RNA binding protein
3
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
129
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
214
bam
169
bed narrowPeak
169
bigWig
147
bigBed narrowPeak
94
fastq
15
bed bed3+
Organism
214
Homo sapiens
Biosample type
163
tissue
43
in vitro differentiated cells
5
primary cell
3
stem cell
Organ
63
liver
50
blood vessel
50
vasculature
28
brain
24
epithelium
21
heart
13
embryo
7
limb
7
musculature of body
5
artery
5
kidney
2
pancreas
Project
214
AMP
Genome assembly (visualization)
174
hg19
173
GRCh38
Lab
214
AMP-T2D consortium
Audit category:
27
inconsistent control
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
tissue
liver
38
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 8 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
primary cell
kidney epithelial cell
5
stem cell
hESC
3
See all biosamples
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