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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
97
DNA binding
62
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
control
5
RNA binding protein
5
transcription factor
Date released
667
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
168
July, 2018
129
February, 2023
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
66
May, 2022
64
March, 2020
59
November, 2019
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
179
bigWig
176
bam
104
bed narrowPeak
99
bigBed narrowPeak
62
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
202
Homo sapiens
Biosample type
170
tissue
32
primary cell
Organ
51
vasculature
50
blood vessel
40
brain
40
heart
18
connective tissue
17
epithelium
16
musculature of body
15
kidney
12
adipose tissue
11
limb
10
liver
7
pancreas
6
artery
2
pericardium
1
eye
Project
202
AMP
Genome assembly (visualization)
185
hg19
172
GRCh38
Lab
202
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
control
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
temporal lobe
13
1
1
thoracic aorta
12
2
1
ascending aorta
13
1
aorta
11
2
angular gyrus
12
+ See 28 more…
primary cell
kidney epithelial cell
4
1
1
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 18 more…
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