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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
23
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
194
Transcription
100
DNA accessibility
23
DNA binding
1
3D chromatin structure
Target of assay
23
control
Date released
647
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
125
October, 2019
101
July, 2019
93
November, 2017
64
February, 2023
61
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
28
May, 2022
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
bed narrowPeak
1
hic
Organism
315
Homo sapiens
Biosample type
166
tissue
148
primary cell
3
cell line
2
stem cell
Organ
167
liver
Project
269
AMP
45
T1D
4
community
1
ITG
Genome assembly (visualization)
233
hg19
189
GRCh38
Lab
269
AMP-T2D consortium
45
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
143
23
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC-BH1
1
1
HepG2
1
stem cell
SB Ad3.1
1
1
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