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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
138
ATAC-seq
50
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
217
Transcription
139
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
129
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
307
bam
280
bigWig
189
tsv
65
bed narrowPeak
50
tagAlign
24
fastq
7
txt
1
bed bed3+
Organism
407
Homo sapiens
Biosample type
259
tissue
147
primary cell
1
cell line
Organ
234
liver
24
pancreas
2
musculature of body
Project
362
AMP
45
T1D
Genome assembly (visualization)
299
hg19
207
GRCh38
Lab
298
AMP-T2D consortium
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
407 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
liver
163
20
50
islet of Langerhans
6
18
skeletal muscle tissue
1
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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