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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
DNA accessibility
14
Transcription
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
196
August, 2021
152
May, 2020
120
May, 2019
117
February, 2021
113
February, 2023
94
December, 2017
80
April, 2019
74
October, 2018
73
November, 2018
66
May, 2022
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
8
December, 2018
8
January, 2021
7
January, 2018
7
January, 2019
5
March, 2019
5
March, 2023
4
July, 2018
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
65
bed narrowPeak
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
3
bigWig
Organism
112
Homo sapiens
Biosample type
91
tissue
16
in vitro differentiated cells
6
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
27
eye
19
pancreas
14
connective tissue
13
epithelium
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
90
AMP
23
T1D
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
87
AMP-T2D consortium
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
organ_slims!
bodily fluid
files.file_type!
tsv
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
pigmented layer of retina
12
acetabular part of hip bone
1
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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