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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
11
ChIP-seq
5
total RNA-seq
1
ATAC-seq
Assay category
21
DNA accessibility
11
DNA binding
5
Transcription
Target of assay
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
18
June, 2019
18
October, 2019
1
February, 2020
Available data
36
bam
25
bigWig
21
bed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
20
bigBed narrowPeak
5
tsv
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
689
liver
643
pancreas
606
connective tissue
459
adipose tissue
324
kidney
296
heart
279
epithelium
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
37
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
37 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
tibial nerve
2
11
5
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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