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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
37
ChIP-seq
13
ATAC-seq
3
DNase-seq
2
Hi-C
2
WGBS
2
pCHi-C
1
FAIRE-seq
Assay category
62
Transcription
37
DNA binding
17
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
150
February, 2021
21
October, 2019
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
2
March, 2020
1
May, 2021
1
October, 2017
Available data
110
bam
89
bigWig
88
txt
59
tsv
35
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
206
Homo sapiens
Biosample type
183
tissue
23
primary cell
Organ
794
pancreas
791
liver
684
connective tissue
491
adipose tissue
393
heart
372
epithelium
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
205
AMP
1
T1D
Genome assembly (visualization)
101
hg19
94
GRCh38
Lab
205
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
206 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
spleen
20
1
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
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