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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
February, 2023
7
May, 2022
5
February, 2021
1
October, 2022
Available data
3289
bam
3053
bigWig
1712
bed narrowPeak
1592
tsv
1100
fastq
949
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
271
bed bed3+
77
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
76
Homo sapiens
Biosample type
73
tissue
3
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
77
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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