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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
39
DNA accessibility
1
3D chromatin structure
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
68
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
5
March, 2023
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
1
hic
Organism
222
Homo sapiens
Biosample type
121
primary cell
95
tissue
9
cell line
2
stem cell
Organ
47
kidney
30
pancreas
19
lung
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
156
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
98
hg19
Lab
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
7
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
award.project!
AMP
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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