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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
25
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
542
February, 2021
318
November, 2017
306
May, 2020
296
August, 2021
212
August, 2017
189
June, 2019
170
May, 2021
162
July, 2018
118
February, 2023
106
July, 2019
97
October, 2019
88
November, 2018
66
May, 2022
61
December, 2017
49
April, 2018
47
September, 2023
46
October, 2018
45
March, 2020
41
September, 2018
39
November, 2019
35
December, 2018
26
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
May, 2023
11
October, 2017
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
2
June, 2018
1
August, 2022
1
October, 2022
Available data
85
bigWig
82
bam
65
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
106
Homo sapiens
Biosample type
77
tissue
29
primary cell
Organ
24
heart
18
brain
17
connective tissue
12
adipose tissue
12
epithelium
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
106
AMP
Genome assembly (visualization)
89
hg19
79
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone modification
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
106 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 19 more…
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