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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
ChIP-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
34
DNA accessibility
12
Transcription
3
DNA binding
Target of assay
168
histone
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
30
June, 2019
12
July, 2019
3
November, 2017
2
November, 2018
1
October, 2017
1
October, 2019
Available data
49
bam
49
bigWig
35
bed broadPeak
35
bed narrowPeak
35
bigBed broadPeak
35
bigBed narrowPeak
32
bed bed3+
12
tsv
6
fastq
Organism
49
Homo sapiens
Biosample type
38
tissue
11
primary cell
Organ
532
connective tissue
489
pancreas
461
liver
423
adipose tissue
196
epithelium
175
kidney
170
heart
125
vasculature
122
blood vessel
108
artery
66
bone element
53
blood
53
bodily fluid
49
brain
49
limb
40
musculature of body
18
embryo
18
ureter
10
spleen
8
skeleton
7
nerve
5
eye
2
vein
1
pericardium
Project
49
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
49
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
49 results
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DNase-seq
total RNA-seq
small RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
brain
14
1
frontal cortex
2
1
1
cerebellum (Hemisphere)
1
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 2 more…
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