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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
31
DNA binding
24
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
18
November, 2017
15
July, 2019
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
64
Homo sapiens
Biosample type
54
tissue
10
primary cell
Organ
678
liver
626
pancreas
579
connective tissue
453
adipose tissue
266
heart
261
epithelium
246
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
29
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
22
hg19
17
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone modification
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
choroid plexus epithelial cell
2
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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