Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
ATAC-seq
212
DNase-seq
60
snATAC-seq
5
FAIRE-seq
Assay category
1743
Transcription
1717
DNA binding
699
DNA accessibility
97
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
81
May, 2022
49
February, 2021
33
October, 2019
29
May, 2021
26
November, 2019
14
September, 2018
12
August, 2021
11
August, 2017
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
410
bed narrowPeak
371
bam
345
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
84
fastq
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
698
Homo sapiens
Biosample type
350
tissue
280
primary cell
38
in vitro differentiated cells
31
cell line
Organ
134
pancreas
123
epithelium
82
kidney
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
592
AMP
97
HPAP
10
LungMap
Genome assembly (visualization)
430
hg19
366
GRCh38
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
29
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
699 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
39
1
1
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 60 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
See all biosamples
Download