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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ATAC-seq
212
DNase-seq
44
snATAC-seq
5
FAIRE-seq
Assay category
1706
DNA binding
1626
Transcription
670
DNA accessibility
55
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
May, 2022
49
February, 2021
33
October, 2019
May, 2021
26
November, 2019
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
441
bed narrowPeak
358
bam
325
bigWig
241
bigBed narrowPeak
208
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
84
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
1
tar
Organism
669
Homo sapiens
Biosample type
410
tissue
207
primary cell
38
in vitro differentiated cells
15
cell line
Organ
163
kidney
79
pancreas
77
heart
68
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
34
connective tissue
34
musculature of body
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
623
AMP
37
HPAP
10
LungMap
Genome assembly (visualization)
428
GRCh38
396
hg19
Lab
532
AMP-T2D consortium
81
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
28
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2022
May, 2021
BIOSAMPLE
ASSAY
670 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
39
1
1
1
coronary artery
36
2
heart
18
retina
15
3
+ See 60 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
13
macrophage
11
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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