Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ATAC-seq
8
DNase-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
467
Transcription
218
DNA binding
134
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
39
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
57
bam
56
bed narrowPeak
51
bigWig
43
fastq
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
134
Homo sapiens
Biosample type
71
primary cell
43
tissue
20
cell line
Organ
163
kidney
134
pancreas
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
85
AMP
49
HPAP
Genome assembly (visualization)
67
GRCh38
61
hg19
Lab
80
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
134 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
29
1
1
1
body of pancreas
4
4
pancreas
2
1
cell line
EndoC_BH1
19
Panc1
1
Download