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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
47
WGBS
4
Hi-C
2
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
183
Transcription
48
DNA accessibility
47
DNA methylation
4
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
95
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
5
March, 2023
3
March, 2020
3
October, 2022
1
May, 2021
Available data
159
fastq
114
zippedFastqFolder
8
tsv
4
bam
4
bigWig
4
hic
3
bedpe bed3+
3
cool
2
bed narrowPeak
Organism
280
Homo sapiens
Biosample type
276
primary cell
tissue
6
cell line
2
stem cell
Organ
107
epithelium
107
pancreas
Project
AMP
275
HPAP
4
T1D
4
community
1
ITG
Genome assembly (visualization)
7
hg19
5
GRCh38
Lab
275
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
4
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
assay_title!
ATAC-seq
biosample_type!
tissue
award.project!
AMP
BIOSAMPLE
ASSAY
284 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
chondrocytes
1
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cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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