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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
ATAC-seq
1
pCHi-C
Assay category
64
DNA binding
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
5
histone
5
histone modification
5
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
4
October, 2019
1
March, 2020
Available data
60
bam
60
fastq
54
bed narrowPeak
54
bigBed narrowPeak
54
bigWig
1
tsv
Organism
65
Homo sapiens
Biosample type
60
cell line
5
tissue
Organ
772
pancreas
768
liver
658
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
146
bone element
114
limb
96
artery
95
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
65
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
pCHi-C
cell line
GM12878
60
tissue
islet of Langerhans
4
ovary
1
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