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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
129
DNA binding
4
3D chromatin structure
1
DNA accessibility
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
control
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
60
August, 2017
35
December, 2017
31
February, 2018
23
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
247
bigWig
244
bam
131
tsv
119
fastq
111
bed narrowPeak
30
tagAlign
16
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
278
Homo sapiens
Biosample type
2307
tissue
617
primary cell
545
cell line
278
in vitro differentiated cells
9
stem cell
Organ
72
connective tissue
22
embryo
20
epithelium
14
liver
2
pancreas
1
adipose tissue
1
heart
Project
278
AMP
Genome assembly (visualization)
250
hg19
243
GRCh38
4
hg18
Lab
276
AMP-T2D consortium
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
assay_title!
ATAC-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
278 results
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total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
59
1
1
cardiomyocytes
59
3
neural progenitor cell
7
14
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
1
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