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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
31
Transcription
21
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
27
August, 2017
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
622
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
108
Homo sapiens
Biosample type
72
tissue
35
cell line
1
primary cell
Organ
228
pancreas
206
kidney
201
epithelium
180
heart
108
liver
92
bone element
89
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
38
hg19
Lab
40
Karen Mohlke, UNC
37
AMP-T2D consortium
31
Bing Ren, UCSD
lab.title!
Kyle Gaulton, UCSD
assay_title!
RRBS
files.file_type!
bam
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
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