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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1717
ChIP-seq
1418
total RNA-seq
497
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA accessibility
21
DNA methylation
Date released
27
February, 2021
22
May, 2022
15
July, 2019
10
April, 2020
6
August, 2017
6
August, 2021
1
August, 2022
Available data
31
fastq
21
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
86
Homo sapiens
Biosample type
58
primary cell
29
tissue
Organ
10
kidney
10
lung
6
epithelium
6
musculature of body
3
pancreas
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
29
AMP
10
LungMap
Genome assembly (visualization)
20
hg19
Lab
48
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
87 results
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snATAC-seq
RRBS
primary cell
Langerhans cell
48
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
tissue
lung
10
kidney
6
1
skeletal muscle tissue
1
4
islet of Langerhans
1
1
brain
1
+ See 4 more…
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