Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1457
ChIP-seq
1226
total RNA-seq
414
ATAC-seq
355
single cell RNA-seq
202
DNase-seq
87
RNA microarray
73
WGBS
66
snATAC-seq
34
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1226
Transcription
Date released
471
February, 2021
145
May, 2020
120
July, 2018
89
August, 2017
84
February, 2023
67
August, 2021
44
May, 2021
39
July, 2019
28
October, 2019
26
September, 2018
22
February, 2020
20
May, 2022
20
November, 2019
16
September, 2020
12
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1037
tsv
1001
bam
1001
bigWig
222
fastq
53
txt
Organism
1226
Homo sapiens
Biosample type
1018
tissue
147
primary cell
in vitro differentiated cells
61
cell line
Organ
465
connective tissue
398
adipose tissue
391
pancreas
189
liver
129
epithelium
71
heart
62
bone element
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1130
AMP
92
HPAP
4
T1D
Genome assembly (visualization)
1002
GRCh38
1002
hg19
Lab
1055
AMP-T2D consortium
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
organ_slims!
blood vessel
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1226 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
287
liver
167
bone tissue
58
kidney
49
+ See 42 more…
primary cell
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
osteoblast
5
+ See 19 more…
cell line
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
+ See 3 more…
See all biosamples
Download