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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
total RNA-seq
211
ChIP-seq
123
ATAC-seq
74
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
391
Transcription
Date released
120
July, 2018
89
August, 2017
40
May, 2021
37
February, 2023
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
April, 2018
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
332
tsv
330
bam
330
bigWig
178
fastq
Organism
391
Homo sapiens
Biosample type
277
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
398
adipose tissue
391
pancreas
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
334
AMP
53
HPAP
4
T1D
Genome assembly (visualization)
330
GRCh38
330
hg19
Lab
337
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
391 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
273
body of pancreas
3
pancreas
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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