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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
21
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
February, 2021
2
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
20
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
127
Homo sapiens
Biosample type
122
tissue
3
primary cell
2
cell line
Organ
260
liver
260
pancreas
230
epithelium
149
kidney
127
heart
117
connective tissue
92
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
GRCh38
188
hg19
Lab
127
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
127 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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