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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
94
total RNA-seq
58
snATAC-seq
49
ATAC-seq
47
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
239
Transcription
107
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
7
August, 2020
5
March, 2023
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
1
hic
Organism
389
Homo sapiens
Biosample type
322
primary cell
68
tissue
2
cell line
2
stem cell
Organ
151
pancreas
149
epithelium
47
kidney
19
lung
Project
AMP
321
HPAP
47
KPMP
19
LungMap
4
community
2
T1D
1
ITG
Genome assembly (visualization)
17
GRCh38
hg19
Lab
321
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
lab.title!
Kyle Gaulton, UCSD
assembly!
hg19
award.project!
AMP
BIOSAMPLE
ASSAY
394 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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