Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
total RNA-seq
152
single cell RNA-seq
126
ATAC-seq
64
snATAC-seq
47
WGBS
10
MeRIP-seq
5
STARR-seq
4
ChIP-seq
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
327
Transcription
190
DNA accessibility
47
DNA methylation
4
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
9
control
5
nucleotide modification
Date released
154
May, 2022
148
August, 2021
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2023
2
March, 2019
Available data
170
fastq
153
zippedFastqFolder
64
bed narrowPeak
64
xls
57
txt
16
tsv
10
bigWig
1
bam
1
bed broadPeak
1
bedpe bed3+
1
hic
1
vcf
Organism
581
Homo sapiens
Biosample type
322
primary cell
235
tissue
27
cell line
2
stem cell
Organ
190
kidney
163
pancreas
155
epithelium
36
liver
19
lung
Project
321
HPAP
194
AMP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
89
GRCh38
hg19
Lab
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
7
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
586 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
MeRIP-seq
STARR-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
+ See 1 more…
tissue
kidney
49
58
75
6
liver
20
lung
9
10
islet of Langerhans
1
2
4
1
cell line
HepG2
9
2
4
1
EndoC_BH1
6
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download