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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
2897
bam
2655
bigWig
1513
bed narrowPeak
1373
tsv
1193
fastq
1025
bigBed narrowPeak
321
bed broadPeak
284
bigBed broadPeak
274
tagAlign
246
bed bed3+
153
zippedFastqFolder
152
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
151
Homo sapiens
Biosample type
151
tissue
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
1
musculature of body
Project
152
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Kyle Gaulton, UCSD
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
152 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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