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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
128
ChIP-seq
31
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
133
Transcription
128
DNA binding
31
DNA accessibility
4
3D chromatin structure
Target of assay
72
histone
72
histone modification
36
narrow histone mark
35
broad histone mark
29
transcription factor
27
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
60
August, 2017
40
August, 2021
39
February, 2018
26
February, 2021
17
December, 2017
12
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
254
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
305
Homo sapiens
Biosample type
2135
tissue
732
primary cell
305
in vitro differentiated cells
300
cell line
7
stem cell
Organ
81
connective tissue
26
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
305
AMP
Genome assembly (visualization)
250
hg19
231
GRCh38
4
hg18
Lab
300
AMP-T2D consortium
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
bed bed3+
BIOSAMPLE
ASSAY
305 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
5
60
5
cardiomyocytes
59
3
neural progenitor cell
7
21
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
1
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