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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
124
total RNA-seq
23
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
126
DNA binding
126
Transcription
23
DNA accessibility
4
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
transcription factor
33
narrow histone mark
32
broad histone mark
25
control
4
RNA binding protein
2
chromatin remodeller
Date released
85
May, 2021
67
August, 2017
August, 2021
39
February, 2018
29
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
232
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
288
Homo sapiens
Biosample type
1935
tissue
736
primary cell
288
in vitro differentiated cells
258
cell line
10
stem cell
Organ
90
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
288
AMP
Genome assembly (visualization)
242
hg19
220
GRCh38
4
hg18
Lab
285
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
288 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
5
cardiomyocytes
3
59
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
definitive endodermal cell
8
2
1
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