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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
4
GRO-seq
4
total RNA-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
42
DNA binding
6
Transcription
Target of assay
27
control
15
histone
15
histone modification
10
broad histone mark
5
narrow histone mark
Date released
19
August, 2017
9
August, 2021
8
February, 2018
5
December, 2017
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
1
May, 2021
Available data
27
bam
23
fastq
23
tagAlign
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
55
Homo sapiens
Biosample type
988
tissue
436
primary cell
127
cell line
55
in vitro differentiated cells
7
stem cell
Organ
24
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
55
AMP
Genome assembly (visualization)
hg19
265
GRCh38
4
hg18
Lab
55
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
lab.title!!
Kyle Gaulton, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
GRO-seq
total RNA-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
19
1
neural progenitor cell
9
pancreatic endoderm
5
1
cardiomyocytes (cardiac muscle cell)
1
2
Hepatic endoderm
2
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