Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
127
total RNA-seq
25
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
129
Transcription
26
DNA accessibility
4
3D chromatin structure
Date released
79
May, 2021
26
February, 2021
21
August, 2021
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
145
bam
136
bigWig
131
tsv
21
fastq
20
bed narrowPeak
7
bedpe bed3+
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
bed bed3+
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
170
Homo sapiens
Biosample type
1741
tissue
599
primary cell
172
cell line
170
in vitro differentiated cells
7
stem cell
Organ
17
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
170
AMP
Genome assembly (visualization)
161
hg19
145
GRCh38
4
hg18
Lab
166
AMP-T2D consortium
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2023
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
170 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
4
7
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
+ See 23 more…
See all biosamples
Download