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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
127
total RNA-seq
25
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
129
Transcription
26
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
chromatin remodeller
Date released
85
May, 2021
66
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
248
bigWig
138
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
21
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
328
Homo sapiens
Biosample type
2646
tissue
760
primary cell
626
cell line
328
in vitro differentiated cells
10
stem cell
Organ
82
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
328
AMP
Genome assembly (visualization)
277
hg19
262
GRCh38
4
hg18
Lab
324
AMP-T2D consortium
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2023
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
4
7
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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