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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
69
ChIP-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
69
DNA binding
38
DNA accessibility
4
3D chromatin structure
Target of assay
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
31
August, 2017
28
August, 2021
26
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
212
bam
176
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
255
Homo sapiens
Biosample type
2098
tissue
726
primary cell
619
cell line
255
in vitro differentiated cells
8
stem cell
Organ
60
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
255
AMP
Genome assembly (visualization)
215
hg19
187
GRCh38
4
hg18
Lab
248
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
255 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
8
1
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
8
1
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