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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
215
histone
215
histone modification
110
narrow histone mark
104
broad histone mark
64
control
47
transcription factor
16
RNA binding protein
4
chromatin remodeller
Date released
36
August, 2017
17
September, 2018
12
October, 2019
11
December, 2017
8
August, 2021
8
February, 2018
8
June, 2019
2
May, 2019
2
May, 2021
Available data
93
bam
91
bigWig
85
bed narrowPeak
64
fastq
28
bigBed narrowPeak
21
tagAlign
8
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
Organism
104
Homo sapiens
Biosample type
303
tissue
58
primary cell
46
in vitro differentiated cells
19
cell line
1
stem cell
Organ
38
epithelium
27
pancreas
24
connective tissue
9
blood vessel
9
vasculature
9
vein
8
liver
5
kidney
4
embryo
4
musculature of body
Project
104
AMP
Genome assembly (visualization)
90
hg19
89
GRCh38
Lab
104
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
primary cell
pancreatic endocrine cell
11
endothelial cell of umbilical vein
9
pancreatic ductal cell
6
skeletal muscle myoblast
6
mesenchymal stem cell
4
+ See 9 more…
in vitro differentiated cells
adipocyte
20
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
definitive endodermal cell
2
+ See 5 more…
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