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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
162
ChIP-seq
149
total RNA-seq
48
snATAC-seq
31
DNase-seq
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
280
DNA accessibility
162
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
42
February, 2021
34
October, 2019
22
July, 2019
19
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
429
bam
402
fastq
398
bigWig
181
bed narrowPeak
168
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
791
Homo sapiens
Biosample type
2687
tissue
791
primary cell
656
cell line
347
in vitro differentiated cells
10
stem cell
Organ
353
epithelium
299
pancreas
37
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
513
AMP
277
HPAP
1
ITG
Genome assembly (visualization)
403
hg19
356
GRCh38
Lab
513
AMP-T2D consortium
277
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
791 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
13
52
1
pancreatic beta cell
23
12
13
21
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
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