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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
7
single cell RNA-seq
6
ATAC-seq
3
DNase-seq
Assay category
25
DNA binding
9
DNA accessibility
7
Transcription
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
6
July, 2018
4
May, 2020
3
May, 2019
2
October, 2019
1
June, 2018
Available data
41
bam
34
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
13
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
41
Homo sapiens
Biosample type
101
in vitro differentiated cells
62
cell line
41
primary cell
4
tissue
Organ
12
connective tissue
9
epithelium
8
musculature of body
7
kidney
5
heart
5
pancreas
1
liver
1
vasculature
Project
41
AMP
Genome assembly (visualization)
36
hg19
32
GRCh38
Lab
41
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
epithelial cell of proximal tubule
3
1
kidney epithelial cell
3
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