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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
ATAC-seq
3
DNase-seq
2
RRBS
1
single cell RNA-seq
Assay category
25
DNA binding
15
DNA accessibility
2
DNA methylation
1
Transcription
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
6
February, 2023
July, 2018
4
May, 2020
3
May, 2019
2
July, 2019
2
October, 2019
1
June, 2018
Available data
35
bam
28
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
7
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
fastq
Organism
43
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
43
primary cell
1
stem cell
Organ
13
connective tissue
9
epithelium
8
kidney
8
musculature of body
6
heart
1
liver
1
vasculature
Project
43
AMP
Genome assembly (visualization)
32
hg19
26
GRCh38
Lab
43
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
31
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
July, 2018
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
gabaergic neuron
3
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