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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1174
total RNA-seq
1069
ChIP-seq
431
ATAC-seq
361
single cell RNA-seq
209
DNase-seq
87
RNA microarray
74
WGBS
66
snATAC-seq
Hi-C
25
pCHi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1553
Transcription
1069
DNA binding
711
DNA accessibility
96
DNA methylation
Target of assay
751
histone modification
750
histone
389
narrow histone mark
361
broad histone mark
219
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
343
August, 2017
295
May, 2020
274
October, 2019
231
August, 2021
218
June, 2019
176
May, 2022
168
July, 2018
165
February, 2023
120
May, 2019
100
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
58
May, 2021
49
April, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
November, 2019
33
March, 2020
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
4
March, 2019
3
August, 2018
3
June, 2018
2
January, 2018
1
August, 2022
Available data
2312
bam
2166
bigWig
1250
tsv
1147
bed narrowPeak
762
fastq
670
bigBed narrowPeak
262
bed broadPeak
254
tagAlign
236
bed bed3+
225
bigBed broadPeak
153
zippedFastqFolder
151
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
8
csv
6
bed bed3
1
tagAlign bed3+
1
tar
Organism
3539
Homo sapiens
Biosample type
2709
tissue
839
primary cell
653
cell line
343
in vitro differentiated cells
10
stem cell
Organ
793
pancreas
584
connective tissue
490
adipose tissue
414
epithelium
373
liver
334
kidney
323
heart
283
brain
165
vasculature
159
blood vessel
158
bone element
118
limb
90
musculature of body
75
artery
61
eye
43
nerve
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
3157
AMP
321
HPAP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
2214
GRCh38
2130
hg19
Lab
2930
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
140
inconsistent ontology term
36
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
assay_title!
Hi-C
BIOSAMPLE
ASSAY
3548 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
287
71
39
1
1
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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primary cell
pancreatic alpha cell
52
13
35
12
31
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
exocrine cell
39
pancreatic acinar cell
4
8
9
12
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