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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
162
ChIP-seq
95
total RNA-seq
87
single cell RNA-seq
48
snATAC-seq
41
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
268
DNA accessibility
182
Transcription
162
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
55
June, 2019
47
September, 2018
41
February, 2021
32
October, 2019
19
May, 2021
13
July, 2019
9
November, 2017
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
675
Homo sapiens
Biosample type
1609
tissue
675
primary cell
538
cell line
216
in vitro differentiated cells
6
stem cell
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
356
AMP
318
HPAP
1
ITG
Genome assembly (visualization)
257
hg19
200
GRCh38
Lab
356
AMP-T2D consortium
318
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
tsv
BIOSAMPLE
ASSAY
675 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
13
42
25
1
pancreatic beta cell
23
13
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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