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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
48
snATAC-seq
2
DNase-seq
Assay category
182
Transcription
166
DNA accessibility
58
DNA methylation
10
3D chromatin structure
4
DNA binding
Date released
60
May, 2022
55
May, 2020
27
February, 2021
12
February, 2023
7
August, 2020
3
September, 2020
2
October, 2019
Available data
bam
108
bigWig
69
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
1
tar
Organism
166
Homo sapiens
Biosample type
204
tissue
166
primary cell
20
in vitro differentiated cells
19
cell line
Organ
51
epithelium
49
pancreas
2
kidney
Project
97
HPAP
69
AMP
Genome assembly (visualization)
10
GRCh38
Lab
97
Klaus Kaestner, Upenn
69
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
27
audit script error
6
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
166 results
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ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
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