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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
4
ChIP-seq
4
pCHi-C
2
DNase-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
184
Transcription
166
DNA accessibility
58
DNA methylation
10
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
13
July, 2019
7
August, 2020
6
May, 2021
5
March, 2020
3
March, 2023
3
October, 2019
3
October, 2022
1
August, 2017
1
January, 2018
1
November, 2018
1
September, 2018
Available data
bam
413
fastq
401
bigWig
183
bed narrowPeak
178
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
38
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
425
Homo sapiens
Biosample type
842
tissue
420
primary cell
75
cell line
56
in vitro differentiated cells
7
stem cell
Organ
164
epithelium
152
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
324
HPAP
100
AMP
2
community
1
ITG
Genome assembly (visualization)
19
hg19
11
GRCh38
1
hg18
Lab
324
Klaus Kaestner, Upenn
100
AMP-T2D consortium
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
427 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
ChIP-seq
pCHi-C
DNase-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
+ See 28 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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